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I just tested what happens with course files if the course is deleted. I found that a file added to the course is not yet deleted.
In old course related file handling this was ok, because I could delete the folder manually, but this is in 2.0 not possible. This will be a huge problem for larger systems because they get a growing files folder in data.
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Should be already fixed, we are deleting all context files when the course context gets deleted.
The purging of file content files is a bit delayed.
thanks for the report.